1UFO Hydrolase date Jun 03, 2003
title Crystal Structure Of Tt1662 From Thermus Thermophilus
authors K.Murayama, M.Shirouzu, T.Terada, S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein Tt1662
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 31
R_factor 0.170 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.857 129.857 70.119 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand MSE enzyme
note 1UFO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of TT1662 from Thermus thermophilus HB8: a member of the alpha/beta hydrolase fold enzymes., Murayama K, Shirouzu M, Terada T, Kuramitsu S, Yokoyama S, Proteins 2005 Mar 1;58(4):982-4. PMID:15648092
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1ufo.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (1ufo.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (1ufo.pdb3.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 1UFO
  • CSU: Contacts of Structural Units for 1UFO
  • Likely Quarternary Molecular Structure file(s) for 1UFO
  • Retrieve 1UFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UFO from S2C, [Save to disk]
    • View 1UFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UFO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UFO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ufoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ufob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ufoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ufod_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1ufoe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1ufof_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ufo_C] [1ufo_F] [1ufo_A] [1ufo] [1ufo_E] [1ufo_D] [1ufo_B]
  • SWISS-PROT database: [P83821]
  • Domain organization of [P83821_THETH] by SWISSPFAM
    • Other resources with information on 1UFO
  • Community annotation for 1UFO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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