1UHA Sugar Binding Protein date Jun 27, 2003
title Crystal Structure Of Pokeweed Lectin-D2
authors T.Fujii, M.Hayashida, M.Hamasu, M.Ishiguro, Y.Hata
compound source
Molecule: Lectin-D2
Chain: A
 Organism_scientific: Phytolacca Americana
Organism_common: American Pokeweed
Organism_taxid: 3527
Tissue: Roots
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.240 56.950 29.620 90.00 109.30 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA enzyme
related structures by homologous chain: 1ULN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of two lectins from the roots of pokeweed (Phytolacca americana)., Fujii T, Hayashida M, Hamasu M, Ishiguro M, Hata Y, Acta Crystallogr D Biol Crystallogr 2004 Apr;60(Pt 4):665-73. Epub 2004, Mar 23. PMID:15039554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (1uha.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1UHA
  • CSU: Contacts of Structural Units for 1UHA
  • Likely Quarternary Molecular Structure file(s) for 1UHA
  • Structure Factors (177 Kb)
  • Retrieve 1UHA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UHA from S2C, [Save to disk]
  • Re-refined 1uha structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UHA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UHA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1UHA from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UHA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uhaa1, region A:1-42 [Jmol] [rasmolscript] [script source]
        - Domain d1uhaa2, region A:43-82 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uha] [1uha_A]
  • SWISS-PROT database: [P83790]
  • Domain organization of [LED2_PHYAM] by SWISSPFAM
  • Domain found in 1UHA: [ChtBD1 ] by SMART
    • Other resources with information on 1UHA
  • Community annotation for 1UHA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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