1UHG Allergen date Jul 03, 2003
title Crystal Structure Of S-Ovalbumin At 1.9 Angstrom Resolution
authors M.Yamasaki, N.Takahashi, M.Hirose
compound source
Molecule: Ovalbumin
Chain: A, B, C, D
Synonym: S-Ovalbumin
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 1
R_factor 0.196 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.647 70.914 83.386 87.24 71.73 75.95
method X-Ray Diffractionresolution 1.90 Å
ligand DSN, NAG, SEP, SO4 enzyme
related structures by homologous chain: 1OVA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of S-ovalbumin as a non-loop-inserted thermostabilized serpin form., Yamasaki M, Takahashi N, Hirose M, J Biol Chem 2003 Sep 12;278(37):35524-30. Epub 2003 Jul 1. PMID:12840013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1uhg.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (1uhg.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (1uhg.pdb3.gz) 66 Kb
  • Biological Unit Coordinates (1uhg.pdb4.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1UHG
  • CSU: Contacts of Structural Units for 1UHG
  • Likely Quarternary Molecular Structure file(s) for 1UHG
  • Structure Factors (1348 Kb)
  • Retrieve 1UHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UHG from S2C, [Save to disk]
  • Re-refined 1uhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UHG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UHG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uhga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uhgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1uhgc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1uhgd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uhg_A] [1uhg] [1uhg_D] [1uhg_C] [1uhg_B]
  • SWISS-PROT database: [P01012]
  • Domain organization of [OVAL_CHICK] by SWISSPFAM
  • Domain found in 1UHG: [SERPIN ] by SMART
    • Other resources with information on 1UHG
  • Community annotation for 1UHG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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