1UHM Solution structure of the globular domain of linker histone homolog Hho1p from S. cerevisiae date
authors Ono, K., Kusano, O., Shimotakahara, S., Shimizu, M., Yamazaki, T., Shindo, H., RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
related structures by homologous chain: 1UST
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix-turn-helix fold as determined by NMR spectroscopy., Ono K, Kusano O, Shimotakahara S, Shimizu M, Yamazaki T, Shindo H, Nucleic Acids Res 2003 Dec 15;31(24):7199-207. PMID:14654695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (410 Kb) [Save to disk]
  • Biological Unit Coordinates (1uhm.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1UHM
  • Retrieve 1UHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UHM from S2C, [Save to disk]
  • View 1UHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UHM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UHM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uhma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uhm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uhm_A] [1uhm]
  • SWISS-PROT database: [P53551]
  • Domain organization of [H1_YEAST] by SWISSPFAM
  • Domain found in 1UHM: [H15 ] by SMART
  • Other resources with information on 1UHM
  • Community annotation for 1UHM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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