1UIZ Cytokine date Jul 24, 2003
title Crystal Structure Of Macrophage Migration Inhibitory Factor Xenopus Laevis.
authors M.Suzuki, Y.Takamura, M.Maeno, S.Tochinai, D.Iyaguchi, I.Tanaka, J.Nishihira, T.Ishibashi
compound source
Molecule: Macrophage Migration Inhibitory Factor
Chain: A, B, C, D
Synonym: Mif
Engineered: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3a
symmetry Space Group: H 3
R_factor 0.241 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.410 94.410 115.580 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1MIF, 1P1G
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • cytokine activity


    • Primary referenceXenopus laevis macrophage migration inhibitory factor is essential for axis formation and neural development., Suzuki M, Takamura Y, Maeno M, Tochinai S, Iyaguchi D, Tanaka I, Nishihira J, Ishibashi T, J Biol Chem 2004 May 14;279(20):21406-14. Epub 2004 Mar 15. PMID:15024012
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1uiz.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (1uiz.pdb2.gz) 53 Kb
  • CSU: Contacts of Structural Units for 1UIZ
  • Likely Quarternary Molecular Structure file(s) for 1UIZ
  • Retrieve 1UIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UIZ from S2C, [Save to disk]
    • View 1UIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UIZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UIZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uiza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uizb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1uizc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1uizd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uiz_D] [1uiz_C] [1uiz] [1uiz_A] [1uiz_B]
  • SWISS-PROT database: [Q76BK2]
  • Domain organization of [MIF_XENLA] by SWISSPFAM
    • Other resources with information on 1UIZ
  • Community annotation for 1UIZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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