1UJJ Protein Transport Hydrolase date Aug 05, 2003
title Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide From Bace
authors T.Shiba, S.Kametaka, M.Kawasaki, M.Shibata, S.Waguri, Y.Uchiyama, S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A, B
Fragment: Vhs Domain, N-Terminal Domain
Synonym: Gga1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2

Molecule: C-Terminal Peptide From Beta-Secretase
Chain: C
Synonym: C-Terminal Peptide From Bace
Ec: 3.4.23.-
Engineered: Yes

Synthetic: Yes
Other_details: Synthesized Peptide
symmetry Space Group: I 4
R_factor 0.244 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.827 114.827 53.636 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Hydrolase E.C.3.4.23 BRENDA
related structures by homologous chain: 1PY1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1., Shiba T, Kametaka S, Kawasaki M, Shibata M, Waguri S, Uchiyama Y, Wakatsuki S, Traffic 2004 Jun;5(6):437-48. PMID:15117318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1ujj.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1ujj.pdb2.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1UJJ
  • Likely Quarternary Molecular Structure file(s) for 1UJJ
  • Structure Factors (85 Kb)
  • Retrieve 1UJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UJJ from S2C, [Save to disk]
  • Re-refined 1ujj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UJJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UJJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ujja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ujjb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ujj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ujj] [1ujj_B] [1ujj_A] [1ujj_C]
  • SWISS-PROT database: [P56817] [Q9UJY5]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] [GGA1_HUMAN] by SWISSPFAM
  • Domain found in 1UJJ: [VHS ] by SMART
  • Other resources with information on 1UJJ
  • Community annotation for 1UJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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