1ULA Pentosyltransferase date Nov 05, 1991
title Application Of Crystallographic And Modeling Methods In The Purine Nucleoside Phosphorylase Inhibitors
authors S.E.Ealick, S.A.Rule, D.C.Carter, T.J.Greenhough, Y.S.Babu, W.J.C J.Habash, J.R.Helliwell, J.D.Stoeckler, R.E.Parksjunior, S.F.C C.E.Bugg
compound source
Molecule: Purine Nucleoside Phosphorylase
Chain: A
Ec: 2.4.2.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: H 3 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.900 142.900 165.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand SO4 enzyme Transferase E.C.2.4.2.1 BRENDA
note 1ULA supersedes 2PNP
related structures by homologous chain: 1ULB, 1V2H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceApplication of crystallographic and modeling methods in the design of purine nucleoside phosphorylase inhibitors., Ealick SE, Babu YS, Bugg CE, Erion MD, Guida WC, Montgomery JA, Secrist JA 3rd, Proc Natl Acad Sci U S A 1991 Dec 15;88(24):11540-4. PMID:1763067
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1ula.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 1ULA
  • CSU: Contacts of Structural Units for 1ULA
  • Likely Quarternary Molecular Structure file(s) for 1ULA
  • Structure Factors (149 Kb)
  • Retrieve 1ULA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ULA from S2C, [Save to disk]
  • Re-refined 1ula structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ULA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ULA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ULA, from MSDmotif at EBI
  • Genome occurence of 1ULA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ula__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ula from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ula] [1ula_A]
  • SWISS-PROT database: [P00491]
  • Domain organization of [PNPH_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1ULA with the sequences similar proteins can be viewed for 1ULA's classification [PNPH_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PNPH_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1ULA
  • Community annotation for 1ULA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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