1UM1 Structural Genomics, Unknown Function date Sep 22, 2003
title Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna
authors Y.Doi-Katayama, F.Hayashi, H.Hirota, S.Yokoyama, Riken Structura Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Kiaa1849 Protein
Chain: A
Fragment: Pdz Domain
Synonym: Rsgi Ruh-007
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Kiaa1849
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P021030-50
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (517 Kb) [Save to disk]
  • Biological Unit Coordinates (1um1.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1UM1
  • Retrieve 1UM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UM1 from S2C, [Save to disk]
    • View 1UM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UM1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UM1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1um1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1um1] [1um1_A]
  • SWISS-PROT database: [Q96JH8]
  • Domain organization of [RADIL_HUMAN] by SWISSPFAM
  • Domain found in 1UM1: [PDZ ] by SMART
    • Other resources with information on 1UM1
  • Community annotation for 1UM1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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