1UMS Hydrolase Hydrolase Inhibitor date Oct 31, 1995
title Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor Bo 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr Ensemble Of 2 Structures
authors S.R.Van Doren, A.V.Kurochkin, W.Hu, E.R.P.Zuiderweg
compound source
Molecule: Stromelysin-1
Chain: A
Fragment: Catalytic Domain Residues 83 - 256
Synonym: Matrix Metalloproteinase-3, Mmp-3
Ec: 3.4.24.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human Stromelysin-1 Catalytic
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgemex-D
Expression_system_gene: Human Stromelysin-1 Catalytic Domai
Other_details: Induction By M13 With T7 Rna Polymerase
methodSolution NMR
ligand 0DS, CA, ZN BindingDB enzyme Hydrolase E.C.3.4.24.17 BRENDA
related structures by homologous chain: 1FLS, 1UMT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the catalytic domain of human stromelysin complexed with a hydrophobic inhibitor., Van Doren SR, Kurochkin AV, Hu W, Ye QZ, Johnson LL, Hupe DJ, Zuiderweg ER, Protein Sci 1995 Dec;4(12):2487-98. PMID:8580839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (887 Kb) [Save to disk]
  • Biological Unit Coordinates (1ums.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1UMS
  • CSU: Contacts of Structural Units for 1UMS
  • Retrieve 1UMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UMS from S2C, [Save to disk]
  • View 1UMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UMS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UMS, from MSDmotif at EBI
  • Genome occurence of 1UMS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1umsa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ums from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ums_A] [1ums]
  • SWISS-PROT database: [P08254]
  • Domain organization of [MMP3_HUMAN] by SWISSPFAM
  • Domain found in 1UMS: [ZnMc ] by SMART
  • Other resources with information on 1UMS
  • Community annotation for 1UMS at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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