1UMW Transferase date Aug 29, 2003
title Structure Of A Human Plk1 Polo-Box Domainphosphopeptide Com
authors P.Rellos, A.Elia, M.B.Yaffe, S.J.Smerdon
compound source
Molecule: Serinethreonine-Protein Kinase Plk
Chain: A, B
Fragment: Polo-Box Domain, Residues 367-603
Synonym: Plk1, Serine Threonine Protein Kinase 13, Stkp13
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex6p1-Lic

Molecule: Peptide
Chain: E, F

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.260
length a length b length c angle alpha angle beta angle gamma
62.352 79.518 61.993 90.00 93.26 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand TPO enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1Q4O
Primary referenceThe molecular basis for phosphodependent substrate targeting and regulation of Plks by the Polo-box domain., Elia AE, Rellos P, Haire LF, Chao JW, Ivins FJ, Hoepker K, Mohammad D, Cantley LC, Smerdon SJ, Yaffe MB, Cell 2003 Oct 3;115(1):83-95. PMID:14532005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1umw.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1umw.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1UMW
  • CSU: Contacts of Structural Units for 1UMW
  • Likely Quarternary Molecular Structure file(s) for 1UMW
  • Retrieve 1UMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UMW from S2C, [Save to disk]
  • View 1UMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UMW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UMW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1umwa1, region A:373-500 [Jmol] [rasmolscript] [script source]
        - Domain d1umwa2, region A:501-595 [Jmol] [rasmolscript] [script source]
        - Domain d1umwb1, region B:373-500 [Jmol] [rasmolscript] [script source]
        - Domain d1umwb2, region B:501-595 [Jmol] [rasmolscript] [script source]
  • Fold representative 1umw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1umw] [1umw_B] [1umw_E] [1umw_A] [1umw_F]
  • SWISS-PROT database: [P53350]
  • Domain organization of [PLK1_HUMAN] by SWISSPFAM
  • Other resources with information on 1UMW
  • Community annotation for 1UMW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science