1UOI Hydrolase date Sep 16, 2003
title Molecular Dynamics Simulation Of Amyloid Beta 1-42 (Pdb: 1iyt) In Water After 4nano-Seconds
authors A.S.N.Seshasayee, A.Shariff
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A
Fragment: Amyloid Beta, Residues 597-628
Synonym: Amyloid Beta 1-42, App, Abpp
Engineered: Yes
Other_details: Simulated Structure Of Amyloid Bate 1-42 After 4nanosecond
Synthetic: Yes
Other_details: From Pdb Id 1iyt
methodTheoretical Model
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1UOI
  • View 1UOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UOI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1uoi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P05067]
  • Belongs to the amyloid -protein peptide (app) family according to TCDB.
  • Domain organization of [A4_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1UOI with the sequences similar proteins can be viewed for 1UOI's classification [A4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [A4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UOI
  • Community annotation for 1UOI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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