1UOL Dna-Binding Protein date Sep 19, 2003
title Crystal Structure Of The Human P53 Core Domain Mutant M133lv203an239yn268d At 1.9 A Resolution.
authors A.C.Joerger, M.D.Allen, A.R.Fersht
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: Dna Binding (Core) Domain, Residues 94-312
Synonym: Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.000 71.000 104.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand ZN enzyme
related structures by homologous chain: 2BIN, 2BIP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a superstable mutant of human p53 core domain. Insights into the mechanism of rescuing oncogenic mutations., Joerger AC, Allen MD, Fersht AR, J Biol Chem. 2004 Jan 9;279(2):1291-6. Epub 2003 Oct 8. PMID:14534297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1uol.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (1uol.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1UOL
  • CSU: Contacts of Structural Units for 1UOL
  • Likely Quarternary Molecular Structure file(s) for 1UOL
  • Structure Factors (281 Kb)
  • Retrieve 1UOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UOL from S2C, [Save to disk]
  • Re-refined 1uol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UOL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UOL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uola_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uolb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1uol from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uol] [1uol_A] [1uol_B]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1UOL with the sequences similar proteins can be viewed for 1UOL's classification [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UOL
  • Community annotation for 1UOL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science