1UPD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	HEC	enzyme
related structures	by homologous chain: 1UP9, 3CYR
Gene Ontology	Chain Function Process Component A electron transfer activity
Primary reference	Molecular basis for redox-Bohr and cooperative effects in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774: crystallographic and modeling studies of oxidized and reduced high-resolution structures at pH 7.6., Bento I, Matias PM, Baptista AM, da Costa PN, van Dongen WM, Saraiva LM, Schneider TR, Soares CM, Carrondo MA, Proteins. 2004 Jan 1;54(1):135-52. PMID:14705030

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1upd.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 1UPD CSU: Contacts of Structural Units for 1UPD Likely Quarternary Molecular Structure file(s) for 1UPD Structure Factors (230 Kb) Retrieve 1UPD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UPD from S2C, [Save to disk] Re-refined 1upd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UPD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1upd] [1upd_A] SWISS-PROT database: [Q9L915]

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---