1UQS	Glycoprotein	date	Oct 16, 2003
title	The Crystal Structure Of Human Cd1b With A Bound Bacterial G
authors	T.Batuwangala, D.Shepherd, S.D.Gadola, K.J.C.Gibson, N.R.Zaccai, G.S.Besra, V.Cerundolo, E.Y.Jones
compound		source
Molecule: T-Cell Surface Glycoprotein Cd1b Chain: A Fragment: Fragment: Residues 18-295 Synonym: Cd1b Antigen Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Prokaryotic Exression System Expression_system_plasmid: Pet23d
Molecule: Beta-2-Microglobulin Chain: B Synonym: Hdcma22p Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Prokaryotic Exression System Expression_system_plasmid: Pet23d
symmetry	Space Group: P 31 2 1	R_factor 0.236 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.974 96.974 114.834 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	GMM	enzyme
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	The crystal structure of human CD1b with a bound bacterial glycolipid., Batuwangala T, Shepherd D, Gadola SD, Gibson KJ, Zaccai NR, Fersht AR, Besra GS, Cerundolo V, Jones EY, J Immunol 2004 Feb 15;172(4):2382-8. PMID:14764708

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1uqs.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 1UQS CSU: Contacts of Structural Units for 1UQS Likely Quarternary Molecular Structure file(s) for 1UQS Structure Factors (111 Kb) Retrieve 1UQS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UQS from S2C, [Save to disk] Re-refined 1uqs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UQS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UQS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UQS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uqsa1, region A:184-283 [Jmol] [rasmolscript] [script source]     - Domain d1uqsa2, region A:3-183 [Jmol] [rasmolscript] [script source]     - Domain d1uqsb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uqs_A] [1uqs] [1uqs_B] SWISS-PROT database: [P61769] [P29016] Domain organization of [B2MG_HUMAN] [CD1B_HUMAN] by SWISSPFAM Domain found in 1UQS: [IGc1 ] by SMART

Other resources with information on 1UQS

Community annotation for 1UQS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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