1US1 Oxidase date Nov 17, 2003
title Crystal Structure Of Human Vascular Adhesion Protein-1
authors T.T.Airenne, Y.Nymalm, H.Kidron, A.Soderholm, M.S.Johnson, T.A.Sa
compound source
Molecule: Membrane Copper Amine Oxidase
Chain: A, B
Synonym: Vascular Adhesion Protein-1, Vap-1
Ec: 1.4.3.6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 65 2 2
R_factor 0.241 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
226.099 226.099 223.004 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, CU, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1TU5
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the human vascular adhesion protein-1: unique structural features with functional implications., Airenne TT, Nymalm Y, Kidron H, Smith DJ, Pihlavisto M, Salmi M, Jalkanen S, Johnson MS, Salminen TA, Protein Sci. 2005 Aug;14(8):1964-74. PMID:16046623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (1us1.pdb1.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 1US1
  • CSU: Contacts of Structural Units for 1US1
  • Likely Quarternary Molecular Structure file(s) for 1US1
  • Structure Factors (677 Kb)
  • Retrieve 1US1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1US1 from S2C, [Save to disk]
  • Re-refined 1us1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1US1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1US1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1US1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1us1_A] [1us1_B] [1us1]
  • SWISS-PROT database: [Q16853]
  • Domain organization of [AOC3_HUMAN] by SWISSPFAM
  • Other resources with information on 1US1
  • Community annotation for 1US1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science