1USD Signaling Protein date Nov 21, 2003
title Human Vasp Tetramerisation Domain L352m
authors K.Kuhnel, T.Jarchau, E.Wolf, I.Schlichting, U.Walter, A.Wittinghofer, S.V.Strelkov
compound source
Molecule: Vasodilator-Stimulated Phosphoprotein
Chain: A
Fragment: Tetramerization Domain, Residues 335-379
Synonym: Vasp
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.211 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.648 29.648 100.444 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.7 Å
related structures by homologous chain: 1USE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe VASP tetramerization domain is a right-handed coiled coil based on a 15-residue repeat., Kuhnel K, Jarchau T, Wolf E, Schlichting I, Walter U, Wittinghofer A, Strelkov SV, Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17027-32. Epub 2004 Nov 29. PMID:15569942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1usd.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1USD
  • Likely Quarternary Molecular Structure file(s) for 1USD
  • Structure Factors (71 Kb)
  • Retrieve 1USD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1USD from S2C, [Save to disk]
  • Re-refined 1usd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1USD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1USD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1USD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1usda_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1usd] [1usd_A]
  • SWISS-PROT database: [P50552]
  • Domain organization of [VASP_HUMAN] by SWISSPFAM
  • Other resources with information on 1USD
  • Community annotation for 1USD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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