1UT1 Protein Binding date Dec 02, 2003
title Drae Adhesin From Escherichia Coli
authors K.L.Anderson, J.Billington, D.Pettigrew, E.Cota, P.Roversi, P.Sim H.A.Chen, P.Urvil, L.Dumerle, P.Barlow, E.Medof, R.A.G.Smith, B.N C.Le Bouguenec, S.M.Lea, S.Matthews
compound source
Molecule: Dr Hemagglutinin Structural Subunit
Chain: A, B, C, D, E, F
Fragment: Mature Protein, Residues 21-160
Synonym: Draa
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Ih11128
Variant: O75\:K5\:H-
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_plasmid: Pqe-30
Other_details: 6-His-Tagged
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.879 108.507 119.622 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, SO4 enzyme
related structures by homologous chain: 1USQ
Primary referenceHigh resolution studies of the Afa/Dr adhesin DraE and its interaction with chloramphenicol., Pettigrew D, Anderson KL, Billington J, Cota E, Simpson P, Urvil P, Rabuzin F, Roversi P, Nowicki B, du Merle L, Le Bouguenec C, Matthews S, Lea SM, J Biol Chem. 2004 Nov 5;279(45):46851-7. Epub 2004 Aug 24. PMID:15331605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (1ut1.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (1ut1.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1UT1
  • CSU: Contacts of Structural Units for 1UT1
  • Likely Quarternary Molecular Structure file(s) for 1UT1
  • Structure Factors (926 Kb)
  • Retrieve 1UT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UT1 from S2C, [Save to disk]
  • Re-refined 1ut1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UT1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UT1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ut1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ut1b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ut1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ut1d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1ut1e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1ut1f_, region F [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ut1_F] [1ut1_E] [1ut1_A] [1ut1] [1ut1_B] [1ut1_D] [1ut1_C]
  • SWISS-PROT database: [P24093]
  • Domain organization of [DRAA_ECOLX] by SWISSPFAM
    • Other resources with information on 1UT1
  • Community annotation for 1UT1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science