1UTO Hydrolase date Dec 09, 2003
title Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements
authors H.K.S.Leiros, B.O.Brandsdal, O.A.Andersen, V.Os, I.Leiros, R.Helland, J.Otlewski, N.P.Willassen, A.O.Smalas
compound source
Molecule: Trypsinogen
Chain: A
Synonym: Beta-Trypsin
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 31 2 1
length a length b length c angle alpha angle beta angle gamma
54.590 54.590 107.190 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.15 Å
ligand CA, GOL, PEA enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1J8A, 1UTQ

Primary referenceTrypsin specificity as elucidated by LIE calculations, X-ray structures, and association constant measurements., Leiros HK, Brandsdal BO, Andersen OA, Os V, Leiros I, Helland R, Otlewski J, Willassen NP, Smalas AO, Protein Sci 2004 Apr;13(4):1056-70. PMID:15044735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (1uto.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 1UTO
  • CSU: Contacts of Structural Units for 1UTO
  • Likely Quarternary Molecular Structure file(s) for 1UTO
  • Structure Factors (595 Kb)
  • Retrieve 1UTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UTO from S2C, [Save to disk]
  • Re-refined 1uto structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UTO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1UTO from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UTO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1utoa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uto from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uto] [1uto_A]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1UTO: [Tryp_SPc ] by SMART
  • Other resources with information on 1UTO
  • Community annotation for 1UTO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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