1UUT	Hydrolase Dna	date	Jan 10, 2004
title	The Nuclease Domain Of Adeno-Associated Virus Rep Complexed Rbe' Stemloop Of The Viral Inverted Terminal Repeat
authors	F.Dyda, A.B.Hickman, D.R.Ronning, Z.N.Perez, R.M.Kotin
compound		source
Molecule: Rep Protein Chain: A, B Fragment: Nuclease Domain, Residues 1-197 Engineered: Yes Other_details: All Residues Are Deleted After S197		Organism_scientific: Adeno-Associated Virus 5 Organism_taxid: 82300 Strain: Serotype 5 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: 5'-D(Cpapgpcptpcptptptpgp Apgpcptp Chain: C, D Fragment: Rbe Stemloop, Residues 1-15 Engineered: Yes		Synthetic: Yes Organism_scientific: Adeno-Associated Virus 5 Organism_taxid: 82300
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.830 78.705 184.280 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CL, MG	enzyme
related structures	by homologous chain: 1M55
Primary reference	The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces., Hickman AB, Ronning DR, Perez ZN, Kotin RM, Dyda F, Mol Cell 2004 Feb 13;13(3):403-14. PMID:14967147

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (1uut.pdb1.gz) 43 Kb Biological Unit Coordinates (1uut.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 1UUT CSU: Contacts of Structural Units for 1UUT Likely Quarternary Molecular Structure file(s) for 1UUT Retrieve 1UUT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UUT from S2C, [Save to disk]

View 1UUT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UUT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UUT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uuta_, region A [Jmol] [rasmolscript] [script source]     - Domain d1uutb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uut_D] [1uut_A] [1uut_C] [1uut_B] [1uut] SWISS-PROT database: [Q9YJC1] Domain organization of [Q9YJC1_9VIRU] by SWISSPFAM

Other resources with information on 1UUT

Community annotation for 1UUT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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