1UVL The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5nt RNA. Conformation B date
authors Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.
compound source
symmetry
R_factor
R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand MN enzyme
related structures by homologous chain: 1UVI, 1UVM
Gene
Ontology
ChainFunctionProcessComponent
A, C, E
  • RNA-directed 5'-3' RNA polym...


    • Primary referenceThe structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase., Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM, Structure (Camb) 2004 Feb;12(2):307-16. PMID:14962391
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (323 Kb) [Save to disk]
  • Biological Unit Coordinates (1uvl.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (1uvl.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (1uvl.pdb3.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 1UVL
  • CSU: Contacts of Structural Units for 1UVL
  • Likely Quarternary Molecular Structure file(s) for 1UVL
  • Structure Factors (1469 Kb)
  • Retrieve 1UVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UVL from S2C, [Save to disk]
  • Re-refined 1uvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UVL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UVL, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uvla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uvlc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1uvle_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uvl_F] [1uvl_A] [1uvl_B] [1uvl_C] [1uvl_D] [1uvl_E] [1uvl]
  • SWISS-PROT database: [P11124]
  • Domain organization of [RDRP_BPPH6] by SWISSPFAM
    • Other resources with information on 1UVL
  • Community annotation for 1UVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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