1UW0 Ligase date Jan 27, 2004
title Solution Structure Of The Zinc-Finger Domain From Dna Ligase Iiia
authors A.W.Kulczyk, J.C.Yang, D.Neuhaus
compound source
Molecule: Dna Ligase III
Chain: A
Fragment: Zinc-Finger Domain, Residues 1-117
Synonym: Polydeoxyribonucleotide Synthase [Atp]
Ec: 6.5.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codon Plus Rp
Expression_system_plasmid: Pet28a
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.5.1.1 BRENDA
note 1UW0 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and DNA binding of the zinc-finger domain from DNA ligase IIIalpha., Kulczyk AW, Yang JC, Neuhaus D, J Mol Biol. 2004 Aug 13;341(3):723-38. PMID:15288782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (879 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1UW0
  • CSU: Contacts of Structural Units for 1UW0
  • Original NMR restraints for 1UW0 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1UW0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UW0 from S2C, [Save to disk]
  • View 1UW0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UW0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UW0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uw0a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uw0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uw0_A] [1uw0]
  • SWISS-PROT database: [P49916]
  • Domain organization of [DNLI3_HUMAN] by SWISSPFAM
  • Domain found in 1UW0: [zf-PARP ] by SMART
  • Other resources with information on 1UW0
  • Community annotation for 1UW0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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