1UWH Transferase date Feb 05, 2004
title The Complex Of Wild Type B-Raf And Bay439006.
authors D.Barford, S.M.Roe, P.T.C.Wan, Cancer Genome Project
compound source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kin
Chain: A, B
Fragment: Kinase Domain, Residues 447-722
Synonym: Braf, V-Raf Murine Sarcoma Viral Oncogene Homolog
Ec: 2.7.1.37, 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41 21 2
R_factor 0.222 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.280 110.280 143.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand BAX, CL BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF., Wan PT, Garnett MJ, Roe SM, Lee S, Niculescu-Duvaz D, Good VM, Jones CM, Marshall CJ, Springer CJ, Barford D, Marais R, Cell 2004 Mar 19;116(6):855-67. PMID:15035987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1uwh.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 1UWH
  • CSU: Contacts of Structural Units for 1UWH
  • Likely Quarternary Molecular Structure file(s) for 1UWH
  • Structure Factors (140 Kb)
  • Retrieve 1UWH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UWH from S2C, [Save to disk]
  • Re-refined 1uwh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UWH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UWH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UWH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uwha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uwhb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1uwh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uwh] [1uwh_B] [1uwh_A]
  • SWISS-PROT database: [P15056]
  • Domain organization of [BRAF_HUMAN] by SWISSPFAM
  • Domain found in 1UWH: [STYKc ] by SMART
  • Other resources with information on 1UWH
  • Community annotation for 1UWH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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