1UXW	Immune System Peptide	date	Mar 01, 2004
title	Crystal Structure Of Hla-B2709 Complexed With The Latent Me Protein 2 Peptide (Lmp2) Of Epstein-Barr Virus
authors	M.Hulsmeyer, C.Kozerski, M.T.Fiorillo, R.Sorrentino, W.Saenger, A B.Uchanska-Ziegler
compound		source
Molecule: Hla Class I Histocompatibility Antigen B-27 Alpha Chain: A Fragment: Extracellular Domain, Residues 25-300 Synonym: Mhc Class I Antigen B27 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B Fragment: Immunoglobulin Domain, Residues 21-119 Synonym: Hdcma22p Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Gene Terminal Protein (Membrane Protein Lmp-2alm Chain: C Fragment: Transmembrane Domain, Residues 236-244 Synonym: Latent Membrane Protein 2 (Lmp2) Engineered: Yes		Synthetic: Yes Organism_scientific: Human Herpesvirus 4 Organism_common: Epstein-Barr Virus Ebv Organism_taxid: 10376
symmetry	Space Group: P 1 21 1	R_factor 0.154 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.920 82.595 62.790 90.00 104.35 90.00
method	X-Ray Diffraction	resolution	1.71 Å
ligand	GOL	enzyme
related structures	by homologous chain: 1KPV, 1N2R
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	Allele-dependent similarity between viral and self-peptide presentation by HLA-B27 subtypes., Fiorillo MT, Ruckert C, Hulsmeyer M, Sorrentino R, Saenger W, Ziegler A, Uchanska-Ziegler B, J Biol Chem. 2005 Jan 28;280(4):2962-71. Epub 2004 Nov 10. PMID:15537660

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (1uxw.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 1UXW CSU: Contacts of Structural Units for 1UXW Likely Quarternary Molecular Structure file(s) for 1UXW Structure Factors (384 Kb) Retrieve 1UXW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UXW from S2C, [Save to disk] Re-refined 1uxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UXW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UXW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UXW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uxwa2, region A:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1uxwa1, region A:182-276 [Jmol] [rasmolscript] [script source]     - Domain d1uxwb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uxw_B] [1uxw] [1uxw_A] [1uxw_C] SWISS-PROT database: [P03989] [P61769] [P13285] Domain organization of [1B27_HUMAN] [B2MG_HUMAN] [LMP2_EBVB9] by SWISSPFAM Domain found in 1UXW: [IGc1 ] by SMART

Other resources with information on 1UXW

Community annotation for 1UXW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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