1UXW CRYSTAL STRUCTURE OF HLA-B*2709 COMPLEXED WITH THE LATENT MEMBRANE PROTEIN 2 PEPTIDE (LMP2) OF EPSTEIN-BARR VIRUS date
authors Hulsmeyer, M., Kozerski, C., Fiorillo, M.T., Sorrentino, R., Saenger, W., Ziegler, A., Uchanska-Ziegler, B.
compound source
symmetry
R_factor
R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.71
ligand GOL enzyme
related structures by homologous chain: 1KPV, 1N2R
Gene
Ontology
ChainFunctionProcessComponent
B
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    • Primary referenceAllele-dependent similarity between viral and self-peptide presentation by HLA-B27 subtypes., Fiorillo MT, Ruckert C, Hulsmeyer M, Sorrentino R, Saenger W, Ziegler A, Uchanska-Ziegler B, J Biol Chem. 2005 Jan 28;280(4):2962-71. Epub 2004 Nov 10. PMID:15537660
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1uxw.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 1UXW
  • CSU: Contacts of Structural Units for 1UXW
  • Likely Quarternary Molecular Structure file(s) for 1UXW
  • Structure Factors (384 Kb)
  • Retrieve 1UXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UXW from S2C, [Save to disk]
  • Re-refined 1uxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UXW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UXW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uxwa2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1uxwa1, region A:182-276 [Jmol] [rasmolscript] [script source]
        - Domain d1uxwb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uxw_B] [1uxw] [1uxw_A] [1uxw_C]
  • SWISS-PROT database: [P03989] [P61769] [P13285]
  • Domain organization of [1B27_HUMAN] [B2MG_HUMAN] [LMP2_EBVB9] by SWISSPFAM
  • Domain found in 1UXW: [IGc1 ] by SMART
    • Other resources with information on 1UXW
  • Community annotation for 1UXW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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