1UY6 Chaperone date Mar 02, 2004
title Human Hsp90-Alpha With 9-Butyl-8-(3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine
authors L.Wright, X.Barril, B.Dymock, L.Sheridan, A.Surgenor, M.Beswick, M.Drysdale, A.Collier, A.Massey, N.Davies, A.Fink, C.Fromont, W.Aherne, K.Boxall, S.Sharp, P.Workman, R.E.Hubbard
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Residues 1-235
Synonym: Hsp 86
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Melanoma
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet19
Other_details: Cloned From Image\:4026275
symmetry Space Group: I 2 2 2
R_factor 0.182 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.930 91.017 98.331 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand PU3 BindingDB enzyme
related structures by homologous chain: 1AMW, 1UY7
Primary referenceStructure-activity relationships in purine-based inhibitor binding to HSP90 isoforms., Wright L, Barril X, Dymock B, Sheridan L, Surgenor A, Beswick M, Drysdale M, Collier A, Massey A, Davies N, Fink A, Fromont C, Aherne W, Boxall K, Sharp S, Workman P, Hubbard RE, Chem Biol. 2004 Jun;11(6):775-85. PMID:15217611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1uy6.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1UY6
  • CSU: Contacts of Structural Units for 1UY6
  • Likely Quarternary Molecular Structure file(s) for 1UY6
  • Structure Factors (337 Kb)
  • Retrieve 1UY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UY6 from S2C, [Save to disk]
  • Re-refined 1uy6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UY6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uy6a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uy6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uy6_A] [1uy6]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 1UY6: [HATPase_c ] by SMART
  • Alignments of the sequence of 1UY6 with the sequences similar proteins can be viewed for 1UY6's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UY6
  • Community annotation for 1UY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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