1UYK Chaperone date Mar 02, 2004
title Human Hsp90-Alpha With 8-Benzo[1,3]Dioxol-,5-Ylmethyl-9-But Yl-2-Fluoro-9h-Purin-6-Ylamine
authors L.Wright, X.Barril, B.Dymock, L.Sheridan, A.Surgenor, M.Beswick, M.Drysdale, A.Collier, A.Massey, N.Davies, A.Fink, C.Fromont, W.Aherne, K.Boxall, S.Sharp, P.Workman, R.E.Hubbard
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Residues 1-235
Synonym: Hsp 86
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Melanoma
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet19
Other_details: Cloned From Image\:4026275
symmetry Space Group: I 2 2 2
R_factor 0.18334 R_Free 0.21814
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.840 90.663 98.684 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.0 Å
ligand PUX BindingDB enzyme
related structures by homologous chain: 1UYD, 1UYG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-activity relationships in purine-based inhibitor binding to HSP90 isoforms., Wright L, Barril X, Dymock B, Sheridan L, Surgenor A, Beswick M, Drysdale M, Collier A, Massey A, Davies N, Fink A, Fromont C, Aherne W, Boxall K, Sharp S, Workman P, Hubbard RE, Chem Biol. 2004 Jun;11(6):775-85. PMID:15217611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1uyk.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1UYK
  • CSU: Contacts of Structural Units for 1UYK
  • Likely Quarternary Molecular Structure file(s) for 1UYK
  • Structure Factors (125 Kb)
  • Retrieve 1UYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UYK from S2C, [Save to disk]
  • Re-refined 1uyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UYK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UYK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uyka_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uyk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uyk] [1uyk_A]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 1UYK: [HATPase_c ] by SMART
  • Alignments of the sequence of 1UYK with the sequences similar proteins can be viewed for 1UYK's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UYK
  • Community annotation for 1UYK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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