1UYL Chaperone date Mar 02, 2004
title Structure-Activity Relationships In Purine-Based Inhibitor Binding To Hsp90 Isoforms
authors L.Wright, X.Barril, B.Dymock, L.Sheridan, A.Surgenor, M.Beswick, M.Drysdale, A.Collier, A.Massey, N.Davies, A.Fink, C.Fromont, W.Aherne, K.Boxall, S.Sharp, P.Workman, R.E.Hubbard
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Residues 1-235
Synonym: Hsp 86
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Melanoma
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet19
Other_details: Cloned From Image\:4026275
symmetry Space Group: I 2 2 2
R_factor 0.199 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.127 88.769 99.944 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.4 Å
related structures by homologous chain: 1BYQ
Primary referenceStructure-activity relationships in purine-based inhibitor binding to HSP90 isoforms., Wright L, Barril X, Dymock B, Sheridan L, Surgenor A, Beswick M, Drysdale M, Collier A, Massey A, Davies N, Fink A, Fromont C, Aherne W, Boxall K, Sharp S, Workman P, Hubbard RE, Chem Biol. 2004 Jun;11(6):775-85. PMID:15217611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1uyl.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1UYL
  • Likely Quarternary Molecular Structure file(s) for 1UYL
  • Structure Factors (768 Kb)
  • Retrieve 1UYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UYL from S2C, [Save to disk]
  • Re-refined 1uyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UYL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1UYL from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UYL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uyla_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uyl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uyl] [1uyl_A]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 1UYL: [HATPase_c ] by SMART
  • Alignments of the sequence of 1UYL with the sequences similar proteins can be viewed for 1UYL's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UYL
  • Community annotation for 1UYL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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