1UZJ Matrix Protein date Mar 12, 2004
title Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human Fibrillin-1, Holo Form.
authors S.S.J.Lee, V.Knott, K.Harlos, P.A.Handford, D.I.Stuart
compound source
Molecule: Fibrillin-1
Chain: A, B, C
Fragment: Begf22-Tb4-Cbegf23, Residues 1486-1647
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Extra-Ellular Matrix
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554
symmetry Space Group: P 1 21 1
R_factor 0.247 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.100 105.600 65.000 90.00 104.20 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand CA enzyme
related structures by homologous chain: 1UZP, 1UZQ
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of the integrin binding fragment from fibrillin-1 gives new insights into microfibril organization., Lee SS, Knott V, Jovanovic J, Harlos K, Grimes JM, Choulier L, Mardon HJ, Stuart DI, Handford PA, Structure (Camb) 2004 Apr;12(4):717-29. PMID:15062093
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1uzj.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1uzj.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (1uzj.pdb3.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1UZJ
  • CSU: Contacts of Structural Units for 1UZJ
  • Likely Quarternary Molecular Structure file(s) for 1UZJ
  • Retrieve 1UZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UZJ from S2C, [Save to disk]
  • View 1UZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UZJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UZJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uzja1, region A:1486-1528 [Jmol] [rasmolscript] [script source]
        - Domain d1uzja3, region A:1529-1604 [Jmol] [rasmolscript] [script source]
        - Domain d1uzja2, region A:1605-1647 [Jmol] [rasmolscript] [script source]
        - Domain d1uzjb1, region B:2486-2528 [Jmol] [rasmolscript] [script source]
        - Domain d1uzjb3, region B:2529-2604 [Jmol] [rasmolscript] [script source]
        - Domain d1uzjb2, region B:2605-2647 [Jmol] [rasmolscript] [script source]
        - Domain d1uzjc1, region C:3486-3528 [Jmol] [rasmolscript] [script source]
        - Domain d1uzjc3, region C:3529-3604 [Jmol] [rasmolscript] [script source]
        - Domain d1uzjc2, region C:3605-3647 [Jmol] [rasmolscript] [script source]
  • Fold representative 1uzj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uzj_C] [1uzj_A] [1uzj_B] [1uzj]
  • SWISS-PROT database: [P35555]
  • Domain organization of [FBN1_HUMAN] by SWISSPFAM
  • Domain found in 1UZJ: [EGF_CA ] by SMART
  • Other resources with information on 1UZJ
  • Community annotation for 1UZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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