1V05 Actin-Binding Protein date Mar 22, 2004
title Dimerization Of Human Filamin C: Crystal Structure Of The Domain 24
authors R.Pudas, T.R.Kiema, J.Ylanne
compound source
Molecule: Filamin C
Chain: A
Fragment: Rod Domain, Residues 2633-2725
Synonym: Gamma-Filamin, Filamin 2, Protein Flnc, Abp-L Abp-280-Like Protein, Actin-Bindin Like Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet24d
symmetry Space Group: P 61 2 2
R_factor 0.18579 R_Free 0.20498
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.099 48.099 117.485 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.43 Å
note 1V05 is a representative structure
Primary referenceStructural basis for vertebrate filamin dimerization., Pudas R, Kiema TR, Butler PJ, Stewart M, Ylanne J, Structure. 2005 Jan;13(1):111-9. PMID:15642266
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1v05.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1V05
  • Likely Quarternary Molecular Structure file(s) for 1V05
  • Structure Factors (209 Kb)
  • Retrieve 1V05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V05 from S2C, [Save to disk]
  • Re-refined 1v05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V05
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1V05 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V05, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v05a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1v05 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v05_A] [1v05]
  • SWISS-PROT database: [Q14315]
  • Domain organization of [FLNC_HUMAN] by SWISSPFAM
  • Domain found in 1V05: [IG_FLMN ] by SMART
  • Other resources with information on 1V05
  • Community annotation for 1V05 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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