1V32 Structural Genomics, Unknown Function date Oct 24, 2003
title Solution Structure Of The Swibmdm2 Domain Of The Hypothetic At5g08430 From Arabidopsis Thaliana
authors M.Yoneyama, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Ri Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein Rafl09-47-K03
Chain: A
Fragment: Swibmdm2 Domain
Synonym: At5g08430
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Rafl09-47-K03
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030128-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (1v32.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1V32
  • Retrieve 1V32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V32 from S2C, [Save to disk]
    • View 1V32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V32
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V32, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v32a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v32] [1v32_A]
  • SWISS-PROT database: [Q9FT92]
  • Domain organization of [Y5843_ARATH] by SWISSPFAM
  • Domain found in 1V32: [SWIB ] by SMART
    • Other resources with information on 1V32
  • Community annotation for 1V32 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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