1V3U	Oxidoreductase	date	Nov 05, 2003
title	Crystal Structure Of Leukotriene B4 12-Hydroxydehydrogenase Prostaglandin 13-Reductase In Apo Form
authors	T.Hori, T.Yokomizo, H.Ago, M.Sugahara, G.Ueno, M.Yamamoto, T.Kumas T.Shimizu, M.Miyano, Riken Structural Genomicsproteomics Ini (Rsgi)
compound		source
Molecule: Leukotriene B4 12-Hydroxydehydrogenaseprostaglan Keto Reductase; Chain: A, B Synonym: Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-Pros 13-Reductase; Ec: 1.3.1.48 Engineered: Yes		Organism_scientific: Cavia Porcellus Organism_common: Domestic Guinea Pig Organism_taxid: 10141 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
symmetry	Space Group: P 1 21 1	R_factor 0.214 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.486 74.591 79.296 90.00 102.05 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CL	enzyme	Oxidoreductase E.C.1.3.1.48 BRENDA
related structures	by homologous chain: 1V3T, 1V3V
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop., Hori T, Yokomizo T, Ago H, Sugahara M, Ueno G, Yamamoto M, Kumasaka T, Shimizu T, Miyano M, J Biol Chem 2004 May 21;279(21):22615-23. Epub 2004 Mar 8. PMID:15007077

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (1v3u.pdb1.gz) 114 Kb LPC: Ligand-Protein Contacts for 1V3U CSU: Contacts of Structural Units for 1V3U Likely Quarternary Molecular Structure file(s) for 1V3U Structure Factors (359 Kb) Retrieve 1V3U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V3U from S2C, [Save to disk] Re-refined 1v3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V3U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V3U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V3U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v3ua1, region A:1-112,A:295-329 [Jmol] [rasmolscript] [script source]     - Domain d1v3ua2, region A:113-294 [Jmol] [rasmolscript] [script source]     - Domain d1v3ub1, region B:1-112,B:295-329 [Jmol] [rasmolscript] [script source]     - Domain d1v3ub2, region B:113-294 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v3u_B] [1v3u_A] [1v3u] SWISS-PROT database: [Q9EQZ5] Domain organization of [PTGR1_CAVPO] by SWISSPFAM

Other resources with information on 1V3U

Community annotation for 1V3U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---