1V4S Transferase date Nov 19, 2003
title Crystal Structure Of Human Glucokinase
authors K.Kamata, M.Mitsuya, T.Nishimura, J.Eiki, Y.Nagata
compound source
Molecule: Glucokinase Isoform 2
Chain: A
Fragment: Residues 11-465
Ec: 2.7.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pflag-Ctc
symmetry Space Group: P 65 2 2
R_factor 0.232 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.855 79.855 322.221 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GLC, MRK, NA BindingDB enzyme Transferase E.C.2.7.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for allosteric regulation of the monomeric allosteric enzyme human glucokinase., Kamata K, Mitsuya M, Nishimura T, Eiki J, Nagata Y, Structure (Camb) 2004 Mar;12(3):429-38. PMID:15016359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1v4s.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1V4S
  • CSU: Contacts of Structural Units for 1V4S
  • Likely Quarternary Molecular Structure file(s) for 1V4S
  • Structure Factors (230 Kb)
  • Retrieve 1V4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V4S from S2C, [Save to disk]
  • Re-refined 1v4s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V4S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V4S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v4sa1, region A:14-218 [Jmol] [rasmolscript] [script source]
        - Domain d1v4sa2, region A:219-461 [Jmol] [rasmolscript] [script source]
  • Fold representative 1v4s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v4s_A] [1v4s]
  • SWISS-PROT database: [P35557]
  • Domain organization of [HXK4_HUMAN] by SWISSPFAM
  • Other resources with information on 1V4S
  • Community annotation for 1V4S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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