1V4S Transferase date Nov 19, 2003
title Crystal Structure Of Human Glucokinase
authors K.Kamata, M.Mitsuya, T.Nishimura, J.Eiki, Y.Nagata
compound source
Molecule: Glucokinase Isoform 2
Chain: A
Fragment: Residues 11-465
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pflag-Ctc
symmetry Space Group: P 65 2 2
R_factor 0.232 R_Free 0.273
length a length b length c angle alpha angle beta angle gamma
79.855 79.855 322.221 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GLC, MRK, NA BindingDB enzyme Transferase E.C. BRENDA

Primary referenceStructural basis for allosteric regulation of the monomeric allosteric enzyme human glucokinase., Kamata K, Mitsuya M, Nishimura T, Eiki J, Nagata Y, Structure (Camb) 2004 Mar;12(3):429-38. PMID:15016359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1v4s.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1V4S
  • CSU: Contacts of Structural Units for 1V4S
  • Likely Quarternary Molecular Structure file(s) for 1V4S
  • Structure Factors (230 Kb)
  • Retrieve 1V4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V4S from S2C, [Save to disk]
  • Re-refined 1v4s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V4S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V4S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v4sa1, region A:14-218 [Jmol] [rasmolscript] [script source]
        - Domain d1v4sa2, region A:219-461 [Jmol] [rasmolscript] [script source]
  • Fold representative 1v4s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v4s_A] [1v4s]
  • SWISS-PROT database: [P35557]
  • Domain organization of [HXK4_HUMAN] by SWISSPFAM
  • Other resources with information on 1V4S
  • Community annotation for 1V4S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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