1V5N Structural Genomics, Unknown Function date Nov 25, 2003
title Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Pr Arabidopsis Thaliana
authors K.Miyamoto, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Pdi-Like Hypothetical Protein At1g60420
Chain: A
Fragment: Dc1 Domain
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Riken Cdna Rafl09-40-E23
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030421-05
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
note 1V5N is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (458 Kb) [Save to disk]
  • Biological Unit Coordinates (1v5n.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 1V5N
  • CSU: Contacts of Structural Units for 1V5N
  • Retrieve 1V5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V5N from S2C, [Save to disk]
    • View 1V5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V5N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V5N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v5na_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v5n_A] [1v5n]
  • SWISS-PROT database: [O80763]
  • Domain organization of [O80763_ARATH] by SWISSPFAM
    • Other resources with information on 1V5N
  • Community annotation for 1V5N at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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