1V63 Dna Binding Protein date Nov 27, 2003
title Solution Structure Of The 6th Hmg Box Of Mouse Ubf1
authors M.Sato, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nucleolar Transcription Factor 1
Chain: A
Fragment: Hmg Box Domain
Synonym: Upstream Binding Factor 1, Ubf-1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 1300010n03
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030107-54
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (529 Kb) [Save to disk]
  • Biological Unit Coordinates (1v63.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1V63
  • Original NMR restraints for 1V63 from PDB
  • Retrieve 1V63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V63 from S2C, [Save to disk]
    • View 1V63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V63
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V63, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v63a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v63] [1v63_A]
  • SWISS-PROT database: [P25976]
  • Domain organization of [UBF1_MOUSE] by SWISSPFAM
  • Domain found in 1V63: [HMG ] by SMART
    • Other resources with information on 1V63
  • Community annotation for 1V63 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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