1V64 Transcription date Nov 27, 2003
title Solution Structure Of The 3rd Hmg Box Of Mouse Ubf1
authors K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structur Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nucleolar Transcription Factor 1
Chain: A
Fragment: Hmg Box Domain
Synonym: Upstream Binding Factor 1, Ubf-1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 1300010n03
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030107-50
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (557 Kb) [Save to disk]
  • Biological Unit Coordinates (1v64.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1V64
  • Retrieve 1V64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V64 from S2C, [Save to disk]
    • View 1V64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V64
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V64, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v64a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v64] [1v64_A]
  • SWISS-PROT database: [P25976]
  • Domain organization of [UBF1_MOUSE] by SWISSPFAM
  • Domain found in 1V64: [HMG ] by SMART
    • Other resources with information on 1V64
  • Community annotation for 1V64 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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