1V66 Ligase date Nov 27, 2003
title Solution Structure Of Human P53 Binding Domain Of Pias-1
authors S.Okubo, F.Hara, Y.Tsuchida, S.Shimotakahara, S.Suzuki, H.Hatanaka, S.Yokoyama, H.Tanaka, H.Yasuda, H.Shindo, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Protein Inhibitor Of Activated Stat Protein 1
Chain: A
Fragment: Residues 1-65
Synonym: Protein Inhibitor Of Activated Stat-1, Pias-1, Gu Binding Protein, Gbp, Rna Helicase II Binding Protein, Deadh Box-Binding Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
methodSolution NMR

Primary referenceNMR structure of the N-terminal domain of SUMO ligase PIAS1 and its interaction with tumor suppressor p53 and A/T-rich DNA oligomers., Okubo S, Hara F, Tsuchida Y, Shimotakahara S, Suzuki S, Hatanaka H, Yokoyama S, Tanaka H, Yasuda H, Shindo H, J Biol Chem 2004 Jul 23;279(30):31455-61. Epub 2004 May 08. PMID:15133049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1V66
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1V66 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V66 from S2C, [Save to disk]
  • View 1V66 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V66
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V66, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v66a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1v66 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v66] [1v66_A]
  • SWISS-PROT database: [O75925]
  • Domain organization of [PIAS1_HUMAN] by SWISSPFAM
  • Domain found in 1V66: [SAP ] by SMART
  • Other resources with information on 1V66
  • Community annotation for 1V66 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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