OCA Atlas for 1V66

1V66

Ligase

date

Nov 27, 2003

title

Solution Structure Of Human P53 Binding Domain Of Pias-1

authors

S.Okubo, F.Hara, Y.Tsuchida, S.Shimotakahara, S.Suzuki, H.Hatanak S.Yokoyama, H.Tanaka, H.Yasuda, H.Shindo, Riken Structural Genomicsproteomics Initiative (Rsgi)

compound

source

Molecule: Protein Inhibitor Of Activated Stat Protein 1
Chain: A
Fragment: Residues 1-65
Synonym: Protein Inhibitor Of Activated Stat-1, Pias-1, Gu Protein, Gbp, Rna Helicase II Binding Protein, Deadh Box-B Protein 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

NMR structure of the N-terminal domain of SUMO ligase PIAS1 and its interaction with tumor suppressor p53 and A/T-rich DNA oligomers., Okubo S, Hara F, Tsuchida Y, Shimotakahara S, Suzuki S, Hatanaka H, Yokoyama S, Tanaka H, Yasuda H, Shindo H, J Biol Chem 2004 Jul 23;279(30):31455-61. Epub 2004 May 08. PMID:15133049

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]

Biological Unit Coordinates (1v66.pdb1.gz) 16 Kb

CSU: Contacts of Structural Units for 1V66

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1V66 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1V66 from S2C, [Save to disk]

View 1V66 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V66

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1V66, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1v66a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v66] [1v66_A]

SWISS-PROT database: [O75925]

Domain organization of [PIAS1_HUMAN] by SWISSPFAM

Domain found in 1V66: [SAP ] by SMART

Other resources with information on 1V66

Community annotation for 1V66 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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