1V6R Contractile Protein date Dec 03, 2003
title Solution Structure Of Endothelin-1 With Its C-Terminal Folding
authors H.Takashima, N.Mimura, T.Ohkubo, T.Yoshida, H.Tamaoki, Y.Kobayashi
compound source
Molecule: Endothelin-1
Chain: A
Synonym: Et-1
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Sequence Of The Peptide Occurs Naturally In Humans.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDistributed computing and NMR constraint-based high-resolution structure determination: applied for bioactive Peptide endothelin-1 to determine C-terminal folding., Takashima H, Mimura N, Ohkubo T, Yoshida T, Tamaoki H, Kobayashi Y, J Am Chem Soc 2004 Apr 14;126(14):4504-5. PMID:15070353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1V6R
  • Original NMR restraints for 1V6R from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1V6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V6R from S2C, [Save to disk]
  • View 1V6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V6R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V6R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v6ra_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1v6r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v6r_A] [1v6r]
  • SWISS-PROT database: [P05305]
  • Domain organization of [EDN1_HUMAN] by SWISSPFAM
  • Domain found in 1V6R: [END ] by SMART
  • Other resources with information on 1V6R
  • Community annotation for 1V6R at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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