1V88 Lipid Transport date Dec 29, 2003
title Solution Structure Of The Pleckstrin Homology Domain Of Oxysterol-Binding Protein-Related Protein 8 (Kiaa1451 Protein)
authors H.Li, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Oxysterol Binding Protein-Related Protein 8
Chain: A
Fragment: Pleckstrin Homology (Ph) Domain
Synonym: Kiaa1451 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Bg00289
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030428-85
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (680 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1V88
  • Retrieve 1V88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V88 from S2C, [Save to disk]
  • View 1V88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V88
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V88, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v88a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1v88 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v88] [1v88_A]
  • SWISS-PROT database: [Q9BZF1]
  • Belongs to the pi4p/ps counter transporter (p/p-ct) family according to TCDB.
  • Domain organization of [OSBL8_HUMAN] by SWISSPFAM
  • Domain found in 1V88: [PH ] by SMART
  • Other resources with information on 1V88
  • Community annotation for 1V88 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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