1V97	Oxidoreductase	date	Jan 21, 2004
title	Crystal Structure Of Bovine Milk Xanthine Dehydrogenase Fyx- Form
authors	K.Okamoto, K.Matsumoto, R.Hille, B.T.Eger, E.F.Pai, T.Nishino
compound		source
Molecule: Xanthine Dehydrogenase Chain: A, B Synonym: Xd Ec: 1.1.1.204		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913
symmetry	Space Group: C 1 2 1	R_factor 0.178 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 167.987 124.612 146.926 90.00 90.99 90.00
method	X-Ray Diffraction	resolution	1.94 Å
ligand	ACY, CA, FAD, FES, FYX, GOL, MOS, MTE BindingDB	enzyme	Oxidoreductase E.C.1.1.1.204 BRENDA
related structures	by homologous chain: 1VDV
Gene Ontology	Chain Function Process Component A, B electron transfer activity
Primary reference	The crystal structure of xanthine oxidoreductase during catalysis: implications for reaction mechanism and enzyme inhibition., Okamoto K, Matsumoto K, Hille R, Eger BT, Pai EF, Nishino T, Proc Natl Acad Sci U S A 2004 May 25;101(21):7931-6. Epub 2004 May 17. PMID:15148401

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (450 Kb) [Save to disk] Biological Unit Coordinates (1v97.pdb1.gz) 442 Kb LPC: Ligand-Protein Contacts for 1V97 CSU: Contacts of Structural Units for 1V97 Likely Quarternary Molecular Structure file(s) for 1V97 Structure Factors (2466 Kb) Retrieve 1V97 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V97 from S2C, [Save to disk] Re-refined 1v97 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V97 in 3D

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Visual 3D analysis of 1V97

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V97, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v97a6, region A:192-414 [Jmol] [rasmolscript] [script source]     - Domain d1v97a2, region A:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1v97a4, region A:415-528 [Jmol] [rasmolscript] [script source]     - Domain d1v97a3, region A:537-694 [Jmol] [rasmolscript] [script source]     - Domain d1v97a5, region A:695-1332 [Jmol] [rasmolscript] [script source]     - Domain d1v97a1, region A:93-165 [Jmol] [rasmolscript] [script source]     - Domain d1v97b6, region B:192-414 [Jmol] [rasmolscript] [script source]     - Domain d1v97b2, region B:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1v97b4, region B:415-528 [Jmol] [rasmolscript] [script source]     - Domain d1v97b3, region B:537-694 [Jmol] [rasmolscript] [script source]     - Domain d1v97b5, region B:695-1332 [Jmol] [rasmolscript] [script source]     - Domain d1v97b1, region B:93-165 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v97] [1v97_A] [1v97_B] SWISS-PROT database: [P80457] Domain organization of [XDH_BOVIN] by SWISSPFAM Domains found in 1V97: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART

Other resources with information on 1V97

Community annotation for 1V97 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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