1V9U	Virus Receptor	date	Feb 03, 2004
title	Human Rhinovirus 2 Bound To A Fragment Of Its Cellular Recep Protein
authors	N.Verdaguer, I.Fita, M.Reithmayer, R.Moser, D.Blaas
compound		source
Molecule: Coat Protein Vp1 Chain: 1 Synonym: P1d		Organism_scientific: Human Rhinovirus 2 Organism_taxid: 12130 Strain: Serotype 2
Molecule: Coat Protein Vp2 Chain: 2 Synonym: P1b		Organism_scientific: Human Rhinovirus 2 Organism_taxid: 12130 Strain: Serotype 2
Molecule: Coat Protein Vp3 Chain: 3 Synonym: P1c		Organism_scientific: Human Rhinovirus 2 Organism_taxid: 12130 Strain: Serotype 2
Molecule: Coat Protein Vp4 Chain: 4 Synonym: P1a		Organism_scientific: Human Rhinovirus 2 Organism_taxid: 12130 Strain: Serotype 2
Molecule: Ldl-Receptor Class A 3 Chain: 5 Synonym: Vldl-Receptor Module V3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal-C2x
symmetry	Space Group: P 21 2 21	R_factor 0.285 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 313.100 348.790 380.890 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.60 Å
ligand	CA, DAO	enzyme
Gene Ontology	Chain Function Process Component 1, 3, 2 4 5
Primary reference	X-ray structure of a minor group human rhinovirus bound to a fragment of its cellular receptor protein., Verdaguer N, Fita I, Reithmayer M, Moser R, Blaas D, Nat Struct Mol Biol 2004 May;11(5):429-34. Epub 2004 Apr 4. PMID:15064754

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (1v9u.pdb1.gz) 7588 Kb LPC: Ligand-Protein Contacts for 1V9U CSU: Contacts of Structural Units for 1V9U Likely Quarternary Molecular Structure file(s) for 1V9U Retrieve 1V9U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V9U from S2C, [Save to disk]

View 1V9U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V9U

VIPERdb: visual, structural and computational analysis of 1V9U Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V9U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v9u1_, region 1 [Jmol] [rasmolscript] [script source]     - Domain d1v9u3_, region 3 [Jmol] [rasmolscript] [script source]     - Domain d1v9u.1, region 4:,2 [Jmol] [rasmolscript] [script source]     - Domain d1v9u5_, region 5 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v9u_5] [1v9u_3] [1v9u] [1v9u_4] [1v9u_1] [1v9u_2] SWISS-PROT database: [P04936] [P98155] Domain organization of [POLG_HRV2] [VLDLR_HUMAN] by SWISSPFAM Domain found in 1V9U: [LDLa ] by SMART

Other resources with information on 1V9U

Community annotation for 1V9U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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