1VCA Cell Adhesion Protein date Mar 21, 1995
title Crystal Structure Of An Integrin-Binding Fragment Of Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms Resolution
authors E.Y.Jones, K.Harlos, M.J.Bottomley, R.C.Robinson, P.C.Driscoll, R.M.Edwards, J.M.Clements, T.J.Dudgeon, D.I.Stuart
compound source
Molecule: Human Vascular Cell Adhesion Molecule-1
Chain: A, B
Synonym: Vcam-D1,2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Hw1110
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.700 66.500 113.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1VSC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of an integrin-binding fragment of vascular cell adhesion molecule-1 at 1.8 A resolution., Jones EY, Harlos K, Bottomley MJ, Robinson RC, Driscoll PC, Edwards RM, Clements JM, Dudgeon TJ, Stuart DI, Nature 1995 Feb 9;373(6514):539-44. PMID:7531291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1vca.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (1vca.pdb2.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1VCA
  • Likely Quarternary Molecular Structure file(s) for 1VCA
  • Retrieve 1VCA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VCA from S2C, [Save to disk]
    • View 1VCA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VCA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VCA, from MSDmotif at EBI
  • Genome occurence of 1VCA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vcaa2, region A:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1vcaa1, region A:91-199 [Jmol] [rasmolscript] [script source]
        - Domain d1vcab2, region B:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1vcab1, region B:91-199 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vca] [1vca_B] [1vca_A]
  • SWISS-PROT database: [P19320]
  • Domain organization of [VCAM1_HUMAN] by SWISSPFAM
  • Domain found in 1VCA: [IG ] by SMART
    • Other resources with information on 1VCA
  • Community annotation for 1VCA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1VCA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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