1VCX Electron Transport date Mar 17, 2004
title Neutron Crystal Structure Of The Wild Type Rubredoxin From P Furiosus At 1.5a Resolution
authors K.Kurihara, I.Tanaka, T.Chatake, M.W.W.Adams, F.E.Jenney Jr., N.M R.Bau, N.Niimura
compound source
Molecule: Rubredoxin
Chain: A
Synonym: Pf Rd
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.217
length a length b length c angle alpha angle beta angle gamma
34.320 35.310 44.230 90.00 90.00 90.00
method Neutron Diffractionresolution 1.50 Å
ligand FE enzyme
related structures by homologous chain: 1IU5, 7RXN
  • electron transfer activity

  • Primary referenceNeutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules., Kurihara K, Tanaka I, Chatake T, Adams MW, Jenney FE Jr, Moiseeva N, Bau R, Niimura N, Proc Natl Acad Sci U S A 2004 Aug 3;101(31):11215-20. Epub 2004 Jul 22. PMID:15272083
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1vcx.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1VCX
  • CSU: Contacts of Structural Units for 1VCX
  • Likely Quarternary Molecular Structure file(s) for 1VCX
  • Structure Factors (55 Kb)
  • Retrieve 1VCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VCX from S2C, [Save to disk]
  • View 1VCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VCX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VCX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vcxa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1vcx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vcx] [1vcx_A]
  • SWISS-PROT database: [P24297]
  • Domain organization of [RUBR_PYRFU] by SWISSPFAM
  • Other resources with information on 1VCX
  • Community annotation for 1VCX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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