1VDX		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL	enzyme
related structures	by homologous chain: 1VGJ
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of a putative 2'-5' RNA ligase from Pyrococcus horikoshii., Rehse PH, Tahirov TH, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1207-12. Epub 2005, Aug 16. PMID:16131753

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (1vdx.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 1VDX CSU: Contacts of Structural Units for 1VDX Likely Quarternary Molecular Structure file(s) for 1VDX Structure Factors (113 Kb) Retrieve 1VDX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VDX from S2C, [Save to disk] Re-refined 1vdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VDX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vdx] [1vdx_A] SWISS-PROT database: [O57823]

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