1VE6	Hydrolase	date	Mar 27, 2004
title	Crystal Structure Of An Acylpeptide Hydrolaseesterase From Pernix K1
authors	M.Bartlam, G.Wang, R.Gao, H.Yang, X.Zhao, G.Xie, S.Cao, Y.Feng, Z.Ra
compound		source
Molecule: Acylamino-Acid-Releasing Enzyme Chain: A, B Synonym: Aare, Acyl-Peptide Hydrolase, Aph, Acylaminoacyl-P Ec: 3.4.19.1 Engineered: Yes		Organism_scientific: Aeropyrum Pernix Organism_taxid: 56636 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.730 104.739 170.944 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	BOG, GOL	enzyme	Hydrolase E.C.3.4.19.1 BRENDA
related structures	by homologous chain: 1VE7
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1., Bartlam M, Wang G, Yang H, Gao R, Zhao X, Xie G, Cao S, Feng Y, Rao Z, Structure (Camb) 2004 Aug;12(8):1481-8. PMID:15296741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (1ve6.pdb1.gz) 94 Kb Biological Unit Coordinates (1ve6.pdb2.gz) 92 Kb LPC: Ligand-Protein Contacts for 1VE6 CSU: Contacts of Structural Units for 1VE6 Likely Quarternary Molecular Structure file(s) for 1VE6 Structure Factors (1369 Kb) Retrieve 1VE6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VE6 from S2C, [Save to disk] Re-refined 1ve6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VE6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VE6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VE6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ve6a2, region A:322-581 [Jmol] [rasmolscript] [script source]     - Domain d1ve6a1, region A:9-321 [Jmol] [rasmolscript] [script source]     - Domain d1ve6b2, region B:322-581 [Jmol] [rasmolscript] [script source]     - Domain d1ve6b1, region B:9-321 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ve6_A] [1ve6] [1ve6_B] SWISS-PROT database: [Q9YBQ2] Domain organization of [APEH_AERPE] by SWISSPFAM

Other resources with information on 1VE6

Community annotation for 1VE6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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