1VEK Structural Genomics, Unknown Function date Mar 31, 2004
title Solution Structure Of Rsgi Ruh-011, A Uba Domain From Arabid
authors Y.Higuchi, T.Abe, H.Hirota, K.Saito, S.Koshiba, T.Kigawa, S.Yokoya Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ubiquitin-Specific Protease 14, Putative
Chain: A
Fragment: Uba Domain
Synonym: Ubp14
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Arabidopsis Thaliana Genomic Dna, Chromosome 3, Tac C K10d20;
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030224-52
Other_details: Cell-Free Protein Synthesis System
methodSolution NMR
note 1VEK is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • Biological Unit Coordinates (1vek.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1VEK
  • Original NMR restraints for 1VEK from PDB
  • Retrieve 1VEK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VEK from S2C, [Save to disk]
  • View 1VEK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VEK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VEK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1veka_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vek] [1vek_A]
  • SWISS-PROT database: [Q8L6Y1]
  • Domain organization of [UBP14_ARATH] by SWISSPFAM
  • Domain found in 1VEK: [UBA ] by SMART
  • Other resources with information on 1VEK
  • Community annotation for 1VEK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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