1VF6 Protein Binding Protein Transport date Apr 09, 2004
title 2.1 Angstrom Crystal Structure Of The Pals-1-L27n And Patj L Heterodimer Complex
authors Y.Li, A.Lavie, B.Margolis, D.Karnak
compound source
Molecule: Pals1-Associated Tight Junction Protein
Chain: A, B
Fragment: L27n Domain
Synonym: Pals-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacycduet-1

Molecule: Maguk P55 Subfamily Member 5
Chain: C, D
Fragment: L27 Domain
Synonym: Patj, Protein Associated With Lin-7 1
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacycduet-1
symmetry Space Group: H 3 2
R_factor 0.242 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.060 111.060 193.690 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
note 1VF6 is a representative structure
related structures by homologous chain: 1Y76
Primary referenceStructural basis for L27 domain-mediated assembly of signaling and cell polarity complexes., Li Y, Karnak D, Demeler B, Margolis B, Lavie A, EMBO J 2004 Jul 21;23(14):2723-33. Epub 2004 Jul 8. PMID:15241471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1vf6.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (1vf6.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (1vf6.pdb3.gz) 75 Kb
  • Biological Unit Coordinates (1vf6.pdb4.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1VF6
  • Likely Quarternary Molecular Structure file(s) for 1VF6
  • Structure Factors (225 Kb)
  • Retrieve 1VF6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VF6 from S2C, [Save to disk]
  • Re-refined 1vf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VF6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VF6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VF6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vf6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vf6b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1vf6c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1vf6d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1vf6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vf6_B] [1vf6_C] [1vf6_A] [1vf6] [1vf6_D]
  • SWISS-PROT database: [Q8NI35] [Q9JLB2]
  • Domain organization of [INADL_HUMAN] [MPP5_MOUSE] by SWISSPFAM
  • Domain found in 1VF6: [L27 ] by SMART
  • Other resources with information on 1VF6
  • Community annotation for 1VF6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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