1VFI	Metal Binding Protein	date	Apr 13, 2004
title	Solution Structure Of Vanabin2 (Ruh-017), A Vanadium-Binding From Ascidia Sydneiensis Samea
authors	T.Hamada, H.Hirota, M.Asanuma, F.Hayashi, N.Kobayashi, T.Ueki, H.M S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound		source
Molecule: Vanadium-Binding Protein 2 Chain: A Fragment: Residues 1-95 Synonym: Vanabin2, Ruh-017 Engineered: Yes		Organism_scientific: Ascidia Sydneiensis Samea Organism_taxid: 79730 Strain: Samea Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal-C
method	Solution NMR
note	1VFI is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Solution structure of Vanabin2, a vanadium(IV)-binding protein from the vanadium-rich ascidian Ascidia sydneiensis samea., Hamada T, Asanuma M, Ueki T, Hayashi F, Kobayashi N, Yokoyama S, Michibata H, Hirota H, J Am Chem Soc 2005 Mar 30;127(12):4216-22. PMID:15783203

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk] Biological Unit Coordinates (1vfi.pdb1.gz) 23 Kb CSU: Contacts of Structural Units for 1VFI Original NMR restraints for 1VFI from PDB Retrieve 1VFI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VFI from S2C, [Save to disk]

View 1VFI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VFI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VFI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vfi_A] [1vfi] SWISS-PROT database: [Q86BW2] Domain organization of [Q86BW2_ASCSS] by SWISSPFAM

Other resources with information on 1VFI

Community annotation for 1VFI at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---