1VGC Serine Protease date May 01, 1997
title Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid Inhibitor Complex
authors V.S.Stoll, B.T.Eger, R.C.Hynes, V.Martichonok, J.B.Jones, E.F.Pai
compound source
Molecule: Gamma Chymotrypsin
Chain: A
Ec: 3.4.21.1
Other_details: A-Chymotrypsin Purchased From Sigma And Converted To G-Chymotrypsin By The Method Of Stoddard Et Al., 1990, Biochemistry, Vol. 29, P. 4871-4879;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas

Molecule: Gamma Chymotrypsin
Chain: B
Ec: 3.4.21.1
Other_details: A-Chymotrypsin Purchased From Sigma And Converted To G-Chymotrypsin By The Method Of Stoddard Et Al., 1990, Biochemistry, Vol. 29, P. 4871-4879;

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas

Molecule: Gamma Chymotrypsin
Chain: C
Ec: 3.4.21.1
Other_details: A-Chymotrypsin Purchased From Sigma And Converted To G-Chymotrypsin By The Method Of Stoddard Et Al., 1990, Biochemistry, Vol. 29, P. 4871-4879

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 42 21 2
R_factor 0.196 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.860 69.860 97.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4, V36 enzyme Hydrolase E.C.3.4.21.1 BRENDA
related structures by homologous chain: 1GCD, 3GCH
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceDifferences in binding modes of enantiomers of 1-acetamido boronic acid based protease inhibitors: crystal structures of gamma-chymotrypsin and subtilisin Carlsberg complexes., Stoll VS, Eger BT, Hynes RC, Martichonok V, Jones JB, Pai EF, Biochemistry 1998 Jan 13;37(2):451-62. PMID:9425066
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1vgc.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1vgc.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (1vgc.pdb3.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1VGC
  • CSU: Contacts of Structural Units for 1VGC
  • Likely Quarternary Molecular Structure file(s) for 1VGC
  • Structure Factors (134 Kb)
  • Retrieve 1VGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VGC from S2C, [Save to disk]
  • Re-refined 1vgc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VGC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VGC, from MSDmotif at EBI
  • Genome occurence of 1VGC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vgc.1, region A:,B:,C [Jmol] [rasmolscript] [script source]
  • Fold representative 1vgc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vgc] [1vgc_B] [1vgc_C] [1vgc_A]
  • SWISS-PROT database: [P00766]
  • Domain organization of [CTRA_BOVIN] by SWISSPFAM
  • Domain found in 1VGC: [Tryp_SPc ] by SMART
  • Other resources with information on 1VGC
  • Community annotation for 1VGC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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