1VGE	Immunoglobulin	date	Jan 04, 1996
title	Tr1.9 Fab Fragment Of A Human Igg1 Kappa Autoantibody
authors	S.Chacko, E.A.Padlan
compound		source
Molecule: Tr1.9 Fab Chain: L Fragment: Fab Fragment Of A Human Igg1 Kappa Autoantibody Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Xl1-Blue Gene: Cdna Derived From Expression_system: Xl1-Blue Cells Expression_system_strain: Xl1-Blue Expression_system_plasmid: Pbp101 Expression_system_gene: Cdna Derived From Thyroid- Infiltrating B Cells;
Molecule: Tr1.9 Fab Chain: H Fragment: Fab Fragment Of A Human Igg1 Kappa Autoantibody Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Xl1-Blue Gene: Cdna Derived From Expression_system: Xl1-Blue Cells Expression_system_strain: Xl1-Blue Expression_system_plasmid: Pbp101 Expression_system_gene: Cdna Derived From Thyroid- Infiltrating B Cells
symmetry	Space Group: P 1 21 1	R_factor 0.180 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.926 62.776 84.790 90.00 107.19 90.00
method	X-Ray Diffraction	resolution	2.00 Å
related structures	by homologous chain: 1SBS, 1T3F, 1TJG, 5LVE
Primary reference	Structural studies of human autoantibodies. Crystal structure of a thyroid peroxidase autoantibody Fab., Chacko S, Padlan EA, Portolano S, McLachlan SM, Rapoport B, J Biol Chem 1996 May 24;271(21):12191-8. PMID:8647813

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1vge.pdb1.gz) 73 Kb CSU: Contacts of Structural Units for 1VGE Likely Quarternary Molecular Structure file(s) for 1VGE Structure Factors (143 Kb) Retrieve 1VGE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VGE from S2C, [Save to disk] Re-refined 1vge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VGE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VGE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VGE, from MSDmotif at EBI Genome occurence of 1VGE's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vgeh1, region H:1-122 [Jmol] [rasmolscript] [script source]     - Domain d1vgeh2, region H:123-225 [Jmol] [rasmolscript] [script source]     - Domain d1vgel1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1vgel2, region L:108-214 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vge_L] [1vge] [1vge_H] SWISS-PROT database: [P01857] Domain organization of [IGHG1_HUMAN] by SWISSPFAM Domains found in 1VGE: [IG_like] [IGv ] by SMART

Other resources with information on 1VGE

Community annotation for 1VGE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1VGE from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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