1VHH Signalling Protein date Oct 03, 1995
title A Potential Catalytic Site Within The Amino-Terminal Signall Of Sonic Hedgehog
authors T.M.T.Hall, J.A.Porter, P.A.Beachy, D.J.Leahy
compound source
Molecule: Sonic Hedgehog
Chain: A
Synonym: Hhg-1, Vhh-1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Potential
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex2t
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.700 79.000 35.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA potential catalytic site revealed by the 1.7-A crystal structure of the amino-terminal signalling domain of Sonic hedgehog., Hall TM, Porter JA, Beachy PA, Leahy DJ, Nature 1995 Nov 9;378(6553):212-6. PMID:7477329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1vhh.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1VHH
  • CSU: Contacts of Structural Units for 1VHH
  • Likely Quarternary Molecular Structure file(s) for 1VHH
  • Structure Factors (177 Kb)
  • Retrieve 1VHH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VHH from S2C, [Save to disk]
  • Re-refined 1vhh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VHH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VHH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VHH, from MSDmotif at EBI
  • Genome occurence of 1VHH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vhh__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vhh] [1vhh_A]
  • SWISS-PROT database: [Q62226]
  • Domain organization of [SHH_MOUSE] by SWISSPFAM
    • Other resources with information on 1VHH
  • Community annotation for 1VHH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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