1VI0 Transcription date Dec 01, 2003
title Crystal Structure Of A Transcriptional Regulator
authors Structural Genomix
compound source
Molecule: Transcriptional Regulator
Chain: A, B
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Yero
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.231 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.404 67.436 98.854 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand DCC, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1vi0.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1VI0
  • CSU: Contacts of Structural Units for 1VI0
  • Likely Quarternary Molecular Structure file(s) for 1VI0
  • Structure Factors (992 Kb)
  • Retrieve 1VI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VI0 from S2C, [Save to disk]
  • Re-refined 1vi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VI0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VI0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vi0a1, region A:6-77 [Jmol] [rasmolscript] [script source]
        - Domain d1vi0a2, region A:78-194 [Jmol] [rasmolscript] [script source]
        - Domain d1vi0b1, region B:6-77 [Jmol] [rasmolscript] [script source]
        - Domain d1vi0b2, region B:78-193 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vi0] [1vi0_A] [1vi0_B]
  • SWISS-PROT database: [P94548]
  • Domain organization of [FADR_BACSU] by SWISSPFAM
    • Other resources with information on 1VI0
  • Community annotation for 1VI0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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